PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g06601.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 431aa    MW: 50107 Da    PI: 7.7438
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g06601.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.59.4e-181192191
              FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                      +fY++YA+e+GF ++k+k+k+       ++r + C+++g+++  k+   +++  ++++r+gCka +k+k++   +w  +++eleHnH+l+p
  Bradi5g06601.1.p 11 EFYRQYAREAGFGIKKHKNKT-------MSRLYACYRQGSSTFYKTG-GERKLAKMSKRVGCKAAVKIKLK-GTEWFYENVELEHNHALNP 92
                      6*************9887554.......599***********99988.88999******************.99**************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-141192IPR004330FAR1 DNA binding domain
PfamPF105518.0E-31213306IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MVFATCEEGY EFYRQYAREA GFGIKKHKNK TMSRLYACYR QGSSTFYKTG GERKLAKMSK  60
RVGCKAAVKI KLKGTEWFYE NVELEHNHAL NPNPCEVKHM RSQKNKDPVI MEYVDDLQQS  120
GVSPIATMNV LATLNGDPEL LPMNDRDLEN RRAANLREEQ VDDVKKLMAF FSEYRTHNPK  180
FYYDIEFDSA GVVKNIFWSH ASCQANYAEF GDVVTFDTTY RSNFYCMPLG MFVGSNHHLQ  240
NVIFGFVLVR DETQKTFEWV FRTFKNCMER KDPICILTDQ DQAMANALQA VFVRTIHRLC  300
RWHMLNKHAE SLNKLYHSNK GLEEKLLTAV NHPLTPAEFE NAWQEMVSEY ELESDPTLCS  360
LYELRASWIA SYFKDIFCGR MTSTQRSEST NRMVKGHHVD DSTPLHVFAK KMYQVLQRRK  420
DAEGQETVAS Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239771.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5FEJ00.0W5FEJ0_WHEAT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-66FAR1-related sequence 5